CommandBook is a plugin for general commands for Bukkit. It was made by sk89q for his server when he moved it over to Bukkit.
- Download: https://github.com/downloads/sk89q/commandbook/commandbook-1.4.3.zip
- Install WorldEdit/
- Drop CommandBook.jar into your plugins/ folder.
- Restart server.
See the configuration page.
CommandBook will use whatever WorldEdit supports for permissions (currently the Permissions plugins and probably its derivatives). However, there are also alternate permissions systems available. Lastly, all ops get all commands. Next to this sk89q has all commands.